SNP Profiles of UF 667 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
1._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
2._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
4._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
9._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
10._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
11._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
12._UF_667	GG	AT	AC	GT	CT	AC	_	AG	CT	AT	GG	AG	CC	CT
13._GC-01-029-2-06	GG	AT	AC	GT	CT	AC	_	AG	CT	AT	GG	AG	CC	CT
14._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
15._RUQ_55	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
16._UF_667	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
17._RUQ_55	_	_	AC	GT	CT	AC	CG	AG	CT	AT	_	AG	CC	CT
18._UF_667	GG	AT	AC	GT	CT	AC	GG	AG	CT	AT	GG	AG	CC	CT
19._RUQ_55	_	_	AC	_	_	_	_	AG	_	_	_	_	AC	_
20._UF_667	GG	AT	AC	GT	CT	AA	CC	AG	CC	AA	GG	AG	AA	CC
21._GC-01-29-2-6	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_
22._RUQ_55	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	_	CC	_
23._UF_667_Fld#_119_Plt#_1	GG	AT	CC	AC	AA	AA	GG	AA	AG	AT	GG	_	AC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
1._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
2._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
3._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
4._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
5._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
6._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
7._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
8._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
9._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
10._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
11._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
12._UF_667	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
13._GC-01-029-2-06	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	AA
14._UF_667	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	AA
15._RUQ_55	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	AA
16._UF_667	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	AA
17._RUQ_55	GT	CC	AA	CT	_	GT	CG	CC	_	_	_	_	AG	_
18._UF_667	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	AA
19._RUQ_55	_	CC	AC	_	AG	GT	CG	_	_	_	_	_	AG	AA
20._UF_667	GG	CG	CC	TT	AA	GG	GG	CC	CT	CG	AA	CC	AG	GG
21._GC-01-29-2-6	AC	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AA
22._RUQ_55	AC	CC	AC	AG	_	AC	CG	GG	AA	GG	AA	AG	AG	AA
23._UF_667_Fld#_119_Plt#_1	AC	CG	AC	AA	_	CC	GG	AG	AG	GG	AT	AA	AA	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
1._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
2._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
3._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
4._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
5._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
6._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
7._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
8._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
9._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
10._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
11._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
12._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
13._GC-01-029-2-06	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
14._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
15._RUQ_55	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
16._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
17._RUQ_55	_	_	_	GT	_	_	_	CT	CG	AG	_	X_X	X_X	X_X
18._UF_667	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X	X_X
19._RUQ_55	_	CT	_	GT	_	_	_	_	CG	_	_	X_X	X_X	X_X
20._UF_667	AA	CC	CC	TT	TT	CC	TT	CT	CG	GG	CC	X_X	X_X	X_X
21._GC-01-29-2-6	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X	X_X
22._RUQ_55	AA	_	_	AA	GG	AA	AA	AG	CG	AG	AG	X_X	X_X	X_X
23._UF_667_Fld#_119_Plt#_1	AA	_	_	AA	AG	AC	AG	AG	CC	AG	GG	X_X	X_X	X_X

Input profile: UF_667

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Mars Center for Cocoa Science, Brazil

Location: 1206 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._UF_667

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 3

Dapeng Zhang, 2016

2._UF_667 GC-01-029-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._UF_667 GC-01-029-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._UF_667

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 5 > FP

Dapeng Zhang, 2016

5._UF_667

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 1 > FP

Dapeng Zhang, 2016

6._UF_667

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 10

Dapeng Zhang, 2016

7._UF_667

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 7

Dapeng Zhang, 2016

8._UF_667 GC-01-029-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._UF_667 GC-01-029-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

10._UF_667 GC-01-029-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

11._UF_667 GC-01-029-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

12._UF_667

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1206 11 > F

Dapeng Zhang, 2016

13._UF_667 GC-01-029-2-06

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

14._UF_667

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0244

Dapeng Zhang, 2016

17._UF_667 RUQ_55

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._UF_667

97.4 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F466 T2

Dapeng Zhang, 2016

19._UF_667 RUQ_55

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

20._UF_667

62.8 %
39 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 292 I-042

Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

58.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

22._UF_667 RUQ_55

58.8 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

23._UF_667 UF_667_Fld#_119_Plt#_1

41.2 %
34 shared markers

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USDA-TARS, United States of America

Location: Field: 119, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520